![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
QTL Home |
Simple Search |
Power Search |
Help |
Tutorial |
FAQ
Oryza sativa QTL "CQAA15" (leaf yellowing tolerance)
| QTL Accession ID | CQAA15 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | LFYTL |
| Trait Name | leaf yellowing tolerance |
| Published Symbol | qCTS4-3 |
| Trait Synonym(s) | |
| Trait Category | Abiotic stress |
| Chromosome | 4 |
| Comments | 60 days old plants treated at 12C constant temperature both during the day and night for 5 days. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 26,857,374-29,061,127 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | M202/IR50 UCD QTL 2003 | BNL6.32 | 4 | 67.4-82.8 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAA15 | 4 | 67.4 | 82.8 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM241 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM317 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM226 | SSR | Oryza sativa | qtl_marker |
| To | RM255 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0002664) | Ming-F et al., 2001 (IAGP) Andaya-V-C et al., 2003 (IAGP) |
| Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
| (PO:0009006) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Species Ontology | (GR_tax:013681) | Ming-F et al., 2001 (SM) Andaya-V-C et al., 2003 (SM) |
Database Cross-References (2)
SNPs (8,938)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 26,857,374 | 29,061,127 | ~160K SNPs x 20 accessions (McNally 2... | 898 | Search for SNPs |
| chr4 | 26,857,374 | 29,061,127 | '1536 chip' - 1311 SNPs x 395 rice ac... | 6 | Search for SNPs |
| chr4 | 26,857,374 | 29,061,127 | Huang X, et al, Nat Genetics 2010 Nov... | 3,923 | Search for SNPs |
| chr4 | 26,857,374 | 29,061,127 | RiceDiversity 44K SNP assay, 34 trait... | 3,923 | Search for SNPs |
| chr4 | 26,857,374 | 29,061,127 | RiceDiversity 44K SNP assay, 34 trait... | 188 | Search for SNPs |
